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Load and Process EMBRACE-I Data

Source: R/load_embrace_i.R
load_embrace_i.Rd

Loads data from multiple sources for the EMBRACE-I study, processes them, and joins them by the `embrace_id` column. The function handles T-stage data, morbidity outcomes, and main study data, combining them into a comprehensive dataset.

Usage

load_embrace_i(
  file_path = here::here("data_raw/embrace_I"),
  add_new_columns = TRUE,
  mapping_file = here::here("data_raw/mapping_table/mapping_table.xlsx"),
  filter_cohort = TRUE
)

Arguments

file_path

Character, path to the directory containing the primary data files

add_new_columns

Logical, if TRUE, calculate and add derived columns (default: TRUE)

mapping_file

Character, path to the column mapping table file

filter_cohort

Logical, if TRUE, filter to include only patients with local failure data (default: TRUE)

Value

A tibble containing the cleaned and joined EMBRACE-I data

Examples

if (FALSE) { # \dontrun{
  # Load with default settings
  df <- load_embrace_i()
  
  # Load without filtering cohort
  df <- load_embrace_i(filter_cohort = FALSE)
  
  # Load with custom mapping file
  df <- load_embrace_i(mapping_file = "path/to/custom_mapping.xlsx")
} # }